Pairwise sequence alignment Help Icon

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  • Pairwise sequence alignment parameters
    Minimum similarity to keep results (0-100%): Gap creation penalty (1-100):
    Minimum overlap to keep results (0-100%): Gap extension penalty (1-10):
    Minimum overlap for rating reward (0-100%): Word size (1-256):
    Maximum alignments to display (1-1000): Penalty for a nucleotide mismatch:
    Select sorting mode:
    select
    		Reward for a nucleotide match:
    Select the reference(s) file(s) to be used for the alignment:
    NameLocationStatus
    FUNCBSLocalReachable
    FUSARIUMhttp://www.cbs.knaw.nl/fusarium/Reachable
    CALONECThttp://www.cbs.knaw.nl/calonectria/Reachable
    INDOORhttp://www.cbs.knaw.nl/indoor/Reachable
    COLLETOhttp://www.q-bank.eu/fungi/Reachable
    OTHERFUNhttp://www.q-bank.eu/fungi/Reachable
    PHOMAhttp://www.q-bank.eu/fungi/Reachable
    PHYTOPHhttp://www.q-bank.eu/fungi/Reachable
    ITSSEQhttp://www.mycologylab.org/Reachable
    FUNBOLDhttp://www.fungalbarcoding.org/Reachable
 
Paste sequence to align:
 
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