Help on BioloMICSNet

How to search our databases button-SmallHelp

The BioloMICSNet Software facilitates interogation of the available databases. The Basic search allows you to search on any kind of field.

Should you need to build more complex queries, then the Advanced search ( button-SmallHelp) will allow you to customize the query.

The following link : BioloMICS Search will redirects you to the Search page

Similarity based on on-line pair-wise alignments button-SmallHelp

The BioloMICSNet Software facilitates identifications by the perfomance of on-line pair-wise and probabilistic sequences (DNA and/or Proteins) identifications.

The following link : BioloMICS Sequence Pairwise Alignment will redirects you to the BioloMICS Sequence Pairwise Alignment page

Polyphasic online identification button-SmallHelp

The BioloMICSNet Software has facilitated perfomance of on-line polyphasic identifications since the first version produced in 1999. Depending on the databases and the criteria that are available, a wide range of characteristics can be entered, combined and analyzed to obtain an identification of an unknown. The more criteria used, the more likely the identification will be reliable. The current on-line version of the software also facilitates for the production of phenetic trees.

For a complete description on fields and algorithms used in the polyphasic identification : button-SmallHelp

The following link : BioloMICS Polyphasic Identification will redirects you to the BioloMICS Polyphasic Identification page

Deposit of user's data

BioloMICSNet users willing to deposit their data or to order items using the cart system, will have to register. We need to be able to contact the depositor/client For specific information (e.g. BioloMICSNet number, possible points of clarification, for example regarding the name, actual date of publication, etc), and we also need to ensure all entries are genuine.

To register for the first time follow the steps below:

1. Enter your email address (see Register New User), click on the 'Create New Profile' button to receive a provisional password by email (this is to make sure that the provided email is real and that you are the person that can open the given email).

2. Read your email and go to the Register menu again. Enter your email and password (obtained by email). Click on the "Login" button and access the BioloMICSNet profile form where personal information has to be entered. Change the password and personalize it. Click on the "Save profile" button. You will then be registered and ready to deposit new items (strains, species, etc) or to order items on-line via the Cart system.

Link your website
Software developers can connect their website to BioloMICSNet.

Basic address 1:
http://www.cbs.knaw.nl/Russulales/BioloMICS.aspx?Table=V2&Descr=V3&Fields=V4&ExactMatch=V5

Basic address 2:
http://www.cbs.knaw.nl/Russulales/BioloMICS.aspx?Table=V2&Rec=V6&Fields=V4&ExactMatch=V5

where,

V1: Database Name (see 'Database' block ' below) where to find the wanted record (see table below for more information)

V2: Table Layout Name (see 'Fields Code' block below) where to find the wanted record (see table below for more information)

V3: Name of the wanted record

V4: Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.: &Fields =All). To display only one field, just paste the code of the field next to the & Fields tag (ex.: &Fields =E1). To display several fields, use several & Fields tag (ex.: &Fields=E1&Fields=T4&Fields=P8). Only the fields that are not empty will be displayed. See table below for more information on fields codes.

V5: Exact match for the queries. Use T for true or F for False (ex.: &ExactMatch =T). Relevant if V3 (Name specified). 'ExactMatch=T' will search for record where Name equals the given value while 'ExactMatch=F' will search for records where Name contains the given value.

V6: Unique ID of a given record (ex.: &Rec =1)





Information details on Database : Russulales


Fields description for Layout : Aphyllophoroid Russulales species

Field CaptionField NameField CodeField type
General information   
 Taxon name_MycobankE1_MycobankU : URL
 Taxon nameE1RLink : Link to multiple records
 BibliographyB1RLink : Link to multiple records
Morphology   
Macroscopic characters   
 Basidiome shapeC1C : Discrete data, multiple state
 Basidiome thickness (mm)S1S : Continuous data range (Min,LP,HP,Max)
 Basidiome textureC2C : Discrete data, multiple state
 RhizomorphsT1T : Discrete data, single state
 Colour of pileus surfaceC3C : Discrete data, multiple state
 Hymenial surfaceC4C : Discrete data, multiple state
 Colour of hymenial surfaceC5C : Discrete data, multiple state
Microscopic characters   
 Types of tramal hyphaeC6C : Discrete data, multiple state
 Hyphal swellingsC7C : Discrete data, multiple state
 Hyphal swellings width (µm)S2S : Continuous data range (Min,LP,HP,Max)
 Hyphal agglutinationC8C : Discrete data, multiple state
 Generative hyphal wall, colourC9C : Discrete data, multiple state
 Generative hyphal width (µm)S3S : Continuous data range (Min,LP,HP,Max)
 ClampsC10C : Discrete data, multiple state
 Skeletal hyphal wall, colourC11C : Discrete data, multiple state
 Skeletal hyphal width (µm)S4S : Continuous data range (Min,LP,HP,Max)
 Gloeoplerous hyphal width (µm)S5S : Continuous data range (Min,LP,HP,Max)
 Lamprocystidia (thick-walled, encrusted) shapeC12C : Discrete data, multiple state
 Lamprocystidia length (µm)S6S : Continuous data range (Min,LP,HP,Max)
 Gloeocystidia shape C13C : Discrete data, multiple state
 Lamprocystidia width (µm)S7S : Continuous data range (Min,LP,HP,Max)
 Gloeocystidia length (µm)S8S : Continuous data range (Min,LP,HP,Max)
 Gloeocystidia width (µm)S9S : Continuous data range (Min,LP,HP,Max)
 Gloeocystidia wall thicknessT2T : Discrete data, single state
 HyphidiaC14C : Discrete data, multiple state
 Hyphidia wall thicknessT3T : Discrete data, single state
 Hymenial cystidiaC15C : Discrete data, multiple state
 Hymenial cystidia length (µm)S10S : Continuous data range (Min,LP,HP,Max)
 Hymenial cystidia width (µm)S11S : Continuous data range (Min,LP,HP,Max)
 Basidia shapeC16C : Discrete data, multiple state
 Basidia length (µm)S12S : Continuous data range (Min,LP,HP,Max)
 Basidia width (µm)S13S : Continuous data range (Min,LP,HP,Max)
 Basidia at least the basal half thick-walledT4T : Discrete data, single state
 Number of sterigmataS14S : Continuous data range (Min,LP,HP,Max)
 Basidiospores shapeC17C : Discrete data, multiple state
 Basidiospores ornamentationC18C : Discrete data, multiple state
 Basidiospore wall thicknessT5T : Discrete data, single state
 Chlamydospores presenceT6T : Discrete data, single state
 Spores amyloidT7T : Discrete data, single state
 Spores width (µm)S15S : Continuous data range (Min,LP,HP,Max)
 Spores length (µm)S16S : Continuous data range (Min,LP,HP,Max)
Chemical reactions   
 Suprahilar plage amyloidT8T : Discrete data, single state
 Other amyloid structuresC19C : Discrete data, multiple state
 AMA (dextrinoid) sporesT9T : Discrete data, single state
 AMA (dextrinoid) hyphaeT10T : Discrete data, single state
 Contents sulpo-positiveT11T : Discrete data, single state
 Sexual behaviourC20C : Discrete data, multiple state
 SubstrateC21C : Discrete data, multiple state
Molecular   
 Internal transcribed spacers (ITS)N1NLink : Link to Sequence
 Large subunit (LSU)N2NLink : Link to Sequence
 Small subunit (SSU)N3NLink : Link to Sequence
 Elongation factor 1 alpha (EF)N4NLink : Link to Sequence
 RPB 2N5NLink : Link to Sequence

Examples of hyperlinks for Table Aphyllophoroid Russulales species in Database Russulales
Example 1: Record #1 [Peniophora lilacea], Display all Fields
http://www.cbs.knaw.nl/Russulales/BioloMICS.aspx?Table=Aphyllophoroid Russulales species&Rec=1&Fields=All&ExactMatch=T
Example 2: Record Name is 'Peniophora lilacea' , Display all Fields, Exact Match Searching
http://www.cbs.knaw.nl/Russulales/BioloMICS.aspx?Table=Aphyllophoroid Russulales species&Name=Peniophora lilacea&Fields=All&ExactMatch=T
Example 3: Record Name containing 'Peniophora' , Display all Fields, Non Exact Match Searching
http://www.cbs.knaw.nl/Russulales/BioloMICS.aspx?Table=Aphyllophoroid Russulales species&Name=Peniophora&Fields=All&ExactMatch=F
Example 4: Record Name containing 'Duportella' , Display Field 'E1_Mycobank' (Taxon name_Mycobank), Non Exact Match Searching
http://www.cbs.knaw.nl/Russulales/BioloMICS.aspx?Table=Aphyllophoroid Russulales species&Name=Duportella&Fields=E1_Mycobank&ExactMatch=F
Example 5: Record Name is 'Duportella pyrispora' , Display Field 'E1_Mycobank' (Taxon name_Mycobank) and 'N5' (RPB 2) , Exact Match Searching
http://www.cbs.knaw.nl/Russulales/BioloMICS.aspx?Table=Aphyllophoroid Russulales species&Name=Duportella pyrispora&Fields=E1_Mycobank&Fields=N5&ExactMatch=T

Contact(s) for Database : Russulales

The following link : BioloMICS Contact information will redirects you to the BioloMICS Contact information page


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