Russula

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The BioloMICSNet Software facilitates interrogation of the available databases. The Basic search allows you to search on any kind of field.

Should you need to build more complex queries, then the Advanced search ( ) will allow you to customize the query.

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Similarity based on on-line pair-wise alignments

The BioloMICSNet Software facilitates identifications by the performance of on-line pair-wise and probabilistic sequences (DNA and/or Proteins) identifications.

The following link : BioloMICS Sequence Pairwise Alignment will redirect you to the BioloMICS Sequence Pairwise Alignment page

Polyphasic online identification

The BioloMICSNet Software has facilitated performance of on-line polyphasic identifications since the first version produced in 1999. Depending on the databases and the criteria that are available, a wide range of characteristics can be entered, combined and analyzed to obtain an identification of an unknown. The more criteria used, the more likely the identification will be reliable. The current on-line version of the software also facilitates for the production of phenetic trees.

For a complete description on fields and algorithms used in the polyphasic identification :

The following link : BioloMICS Polyphasic Identification will redirect you to the BioloMICS Polyphasic Identification page

Deposit of user's data

BioloMICSNet users willing to deposit their data or to order items using the cart system, will have to register. We need to be able to contact the depositor/client For specific information (e.g. BioloMICSNet number, possible points of clarification, for example regarding the name, actual date of publication, etc), and we also need to ensure all entries are genuine.

To register for the first time follow the steps below:

1. Enter your email address (see Register New User), click on the 'Create New Profile' button to receive a provisional password by email (this is to make sure that the provided email is real and that you are the person that can open the given email).

2. Read your email and go to the Register menu again. Enter your email and password (obtained by email). Click on the "Login" button and access the BioloMICSNet profile form where personal information has to be entered. Change the password and personalize it. Click on the "Save profile" button. You will then be registered and ready to deposit new items (strains, species, etc) or to order items on-line via the Cart system.

Link your website

Software developers can connect their website to BioloMICSNet.

Basic address 1:
http://www.cbs.knaw.nl/Russula/BioloMICS.aspx?Table=V2&Descr=V3&Fields=V4&ExactMatch=V5

Basic address 2:
http://www.cbs.knaw.nl/Russula/BioloMICS.aspx?Table=V2&Rec=V6&Fields=V4&ExactMatch=V5

where,

V1: Database Name (see 'Database' block ' below) where to find the wanted record (see table below for more information)

V2: Table Layout Name (see 'Fields Code' block below) where to find the wanted record (see table below for more information)

V3: Name of the wanted record

V4: Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.: &Fields =All). To display only one field, just paste the code of the field next to the & Fields tag (ex.: &Fields =E1). To display several fields, use several & Fields tag (ex.: &Fields=E1&Fields=T4&Fields=P8). Only the fields that are not empty will be displayed. See table below for more information on fields codes.

V5: Exact match for the queries. Use T for true or F for False (ex.: &ExactMatch =T). Relevant if V3 (Name specified). 'ExactMatch=T' will search for record where Name equals the given value while 'ExactMatch=F' will search for records where Name contains the given value.

V6: Unique ID of a given record (ex.: &Rec =1)

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Information details on Database : Russula

Fields description for Layout : Russula species

Field Caption	Field Name	Field Code	Field type
General information
	Altitude	S32	S : Continuous data range (Min,LP,HP,Max)
	Substratum	T59	T : Discrete data, 15 combinations of 4 independant states
	Continent:	C8	C : Discrete data, multiple state
	Authority	E1	E : Text, administrative field
	Synonyms and close species	E3	E : Text, administrative field
	Information given by author(s)	E4	E : Text, administrative field
	Host(s)	E5	E : Text, administrative field
	Taxon name_Mycobank	E6_Mycobank	U : URL
	Taxon name	E6	RLink : Link to one or more records
	Bibliography	B1	RLink : Link to one or more records
Macro-characters
Stipe
	Width of stipe	S4	S : Continuous data range (Min,LP,HP,Max)
	Veil	T13	T : Discrete data, 15 combinations of 4 independant states
	Form of base of stipe	T14	T : Discrete data, 15 combinations of 4 independant states
	Form of stipe	T15	T : Discrete data, 15 combinations of 4 independant states
	Context of stipe	T16	T : Discrete data, 15 combinations of 4 independant states
	Main color(s) of stipe:	C3	C : Discrete data, multiple state
	Length of stipe	S3	S : Continuous data range (Min,LP,HP,Max)
Pileus
	Type of pileipellis	T1	T : Discrete data, 15 combinations of 4 independant states
	Striations of pileus	T2	T : Discrete data, 15 combinations of 4 independant states
	Viscosity of pileus	T3	T : Discrete data, 15 combinations of 4 independant states
	Form of center of pileus	T4	T : Discrete data, 15 combinations of 4 independant states
	Separability of pileus	T5	T : Discrete data, 15 combinations of 4 independant states
Thickness of flesh of pileus
	Thickness of flesh of pileus	T19	T : Discrete data, 15 combinations of 4 independant states
	Thickness of flesh of pileus	S5	S : Continuous data range (Min,LP,HP,Max)
	Main color(s) of pileus:	C1	C : Discrete data, multiple state
	Diameter of pileus	S1	S : Continuous data range (Min,LP,HP,Max)
Lamellae
	Spacing of lamellae	T6	T : Discrete data, 15 combinations of 4 independant states
	Number of lamellulae	T7	T : Discrete data, 15 combinations of 4 independant states
	Furcation of lamellae	T8	T : Discrete data, 15 combinations of 4 independant states
	Color of ridges of lamellae	T9	T : Discrete data, 15 combinations of 4 independant states
	Attachment of lamellae	T10	T : Discrete data, 15 combinations of 4 independant states
	Type of lamellae	T11	T : Discrete data, 15 combinations of 4 independant states
	Type of lamellar ridges	T12	T : Discrete data, 15 combinations of 4 independant states
	Main color(s) of lamellae:	C2	C : Discrete data, multiple state
	Height of lamellae	S2	S : Continuous data range (Min,LP,HP,Max)
	Odor	T17	T : Discrete data, 15 combinations of 4 independant states
	Flavor of flesh	T18	T : Discrete data, 15 combinations of 4 independant states
Color changes
	Fruit body turns green/blue with age	T20	T : Discrete data, 15 combinations of 4 independant states
	Fruit body turns red if touched/cut	T21	T : Discrete data, 15 combinations of 4 independant states
	Fruit body turns yellow-brown with age	T22	T : Discrete data, 15 combinations of 4 independant states
	Fruit body turns br. yellow if touched	T23	T : Discrete data, 15 combinations of 4 independant states
	Fruit body turns black with age/touched	T24	T : Discrete data, 15 combinations of 4 independant states
	Fruit body turns grey with age	T25	T : Discrete data, 15 combinations of 4 independant states
Chemical reactions
	Sulfo-vanillin test on flesh	T26	T : Discrete data, 15 combinations of 4 independant states
	FeSO4 test on flesh	T27	T : Discrete data, 15 combinations of 4 independant states
	Ga´ac test on flesh	T28	T : Discrete data, 15 combinations of 4 independant states
	Phenol test on flesh	T29	T : Discrete data, 15 combinations of 4 independant states
	Aniline test on flesh	T30	T : Discrete data, 15 combinations of 4 independant states
	NH4OH test on flesh	T31	T : Discrete data, 15 combinations of 4 independant states
	Formol test on flesh	T32	T : Discrete data, 15 combinations of 4 independant states
Latex
	Latex	T33	T : Discrete data, 15 combinations of 4 independant states
	Color(s) of fresh latex:	C5	C : Discrete data, multiple state
	Color(s) of dry latex:	C6	C : Discrete data, multiple state
	Main color(s) of Exsiccata:	C4	C : Discrete data, multiple state
Micro-characters
Spores
	Length of spores	S6	S : Continuous data range (Min,LP,HP,Max)
	Width of spores	S7	S : Continuous data range (Min,LP,HP,Max)
	Spore length divided by spore width (Q)	S8	S : Continuous data range (Min,LP,HP,Max)
	Amyloid plage	T34	T : Discrete data, 15 combinations of 4 independant states
	Appearance of spores verrucae	T35	T : Discrete data, 15 combinations of 4 independant states
	Ornamentations in surface view	T36	T : Discrete data, 15 combinations of 4 independant states
	Connection(s) between verrucae	T37	T : Discrete data, 15 combinations of 4 independant states
	Overall appearance of spores	T38	T : Discrete data, 15 combinations of 4 independant states
	Height of verrucae	T39	T : Discrete data, 15 combinations of 4 independant states
	Color of spore deposit	D1	D : Continuous data, single value
	Pictures from Romagnesi, 1967_Link	P1_Link	FLink : Link to File
Basidia
	Length of basidia	S9	S : Continuous data range (Min,LP,HP,Max)
	Width of basidia	S10	S : Continuous data range (Min,LP,HP,Max)
	Number of sterigmata per basidium	T40	T : Discrete data, 15 combinations of 4 independant states
Sterigmata
	Length of sterigmata	S11	S : Continuous data range (Min,LP,HP,Max)
	Width of sterigmata	S12	S : Continuous data range (Min,LP,HP,Max)
Pleurocystidia
	Length of pleurocystidia	S13	S : Continuous data range (Min,LP,HP,Max)
	Width of pleurocystidia	S14	S : Continuous data range (Min,LP,HP,Max)
	Length of pleurocystidial emergence	S15	S : Continuous data range (Min,LP,HP,Max)
	Thickness of wall of pleurocystidia	T41	T : Discrete data, 15 combinations of 4 independant states
	Shape of apices of pleurocystidia	T42	T : Discrete data, 15 combinations of 4 independant states
	Sulfo-vanillin test on pleurocystidia	T43	T : Discrete data, 15 combinations of 4 independant states
	Pleurocystidia abundance:	C7	C : Discrete data, multiple state
Marginal cells
	Length of marginal cells	S16	S : Continuous data range (Min,LP,HP,Max)
	Width of marginal cells	S17	S : Continuous data range (Min,LP,HP,Max)
Subhymenium
	Thickness of subhymenium	S18	S : Continuous data range (Min,LP,HP,Max)
	Thickness of pileus cuticle	S19	S : Continuous data range (Min,LP,HP,Max)
	Thickness of suprapellis	S20	S : Continuous data range (Min,LP,HP,Max)
	Thickness of subpellis	S21	S : Continuous data range (Min,LP,HP,Max)
	Subhymenium	T45	T : Discrete data, 15 combinations of 4 independant states
	Differentiation of supra and subpellis	T46	T : Discrete data, 15 combinations of 4 independant states
	Size of cells in supra and subpellis	T47	T : Discrete data, 15 combinations of 4 independant states
	Gelification of subpellis	T48	T : Discrete data, 15 combinations of 4 independant states
Pileocystidia
	Length of pileocystidia	S22	S : Continuous data range (Min,LP,HP,Max)
	Width of pileocystidia	S23	S : Continuous data range (Min,LP,HP,Max)
	Location of pileocystidia	T49	T : Discrete data, 15 combinations of 4 independant states
	Septation of pileocystidia	T50	T : Discrete data, 15 combinations of 4 independant states
	Shape of apices of pileocystidia	T51	T : Discrete data, 15 combinations of 4 independant states
	Sulfo-vanillin test on pileocystidia	T52	T : Discrete data, 15 combinations of 4 independant states
	Cresyl blue test on pileocystidia	T53	T : Discrete data, 15 combinations of 4 independant states
Hyphae of pileus
	Diameter of subpellis hyphae	S24	S : Continuous data range (Min,LP,HP,Max)
	Diameter of ends of pileipellis hyphae	S25	S : Continuous data range (Min,LP,HP,Max)
	Diameter of primordial hyphae	S26	S : Continuous data range (Min,LP,HP,Max)
	Aggregation of hyphal ends of pileus	T54	T : Discrete data, 15 combinations of 4 independant states
	Vacuolar pigments of hyphae of pileus	T55	T : Discrete data, 15 combinations of 4 independant states
	Membrane pigments of hyphae of pileus	T56	T : Discrete data, 15 combinations of 4 independant states
	Wall of hyphae of pileus	T57	T : Discrete data, 15 combinations of 4 independant states
	Filamentous hyphae of pileus	T58	T : Discrete data, 15 combinations of 4 independant states
Stipitipellis
	Thickness of stipitipellis	S27	S : Continuous data range (Min,LP,HP,Max)
	Diameter of hyphal ends of stipitipellis	S30	S : Continuous data range (Min,LP,HP,Max)
	Length of hyphal ends of stipitipellis	S31	S : Continuous data range (Min,LP,HP,Max)
Caulocystidia
	Length of caulocystidia	S28	S : Continuous data range (Min,LP,HP,Max)
	Width of caulocystidia	S29	S : Continuous data range (Min,LP,HP,Max)
	Thickness of wall of cheilocystidia	T44	T : Discrete data, 15 combinations of 4 independant states
DNA
	rDNA sequences	N1	NLink : Link to Sequence

Examples of hyperlinks for Table Russula species in Database Russula

Example 1: Record #1 [Russula aciculocystis], Display all Fields

http://www.cbs.knaw.nl/Russula/BioloMICS.aspx?Table=Russula species&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Russula aciculocystis' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Russula/BioloMICS.aspx?Table=Russula species&Name=Russula aciculocystis&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Russula' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Russula/BioloMICS.aspx?Table=Russula species&Name=Russula&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Russula' , Display Field 'S32' (Altitude), Non Exact Match Searching

http://www.cbs.knaw.nl/Russula/BioloMICS.aspx?Table=Russula species&Name=Russula&Fields=S32&ExactMatch=F

Example 5: Record Name is 'Russula adusta' , Display Field 'S32' (Altitude) and 'N1' (rDNA sequences) , Exact Match Searching

http://www.cbs.knaw.nl/Russula/BioloMICS.aspx?Table=Russula species&Name=Russula adusta&Fields=S32&Fields=N1&ExactMatch=T

Contact(s) for Database : Russula

The following link : BioloMICS Contact information will redirect you to the BioloMICS Contact information page

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