Mycosphaerella

Help on BioloMICSNet

How to search our databases

The BioloMICSNet Software facilitates interogation of the available databases. The Basic search allows you to search on any kind of field.

Should you need to build more complex queries, then the Advanced search ( ) will allow you to customize the query.

The following link : BioloMICS Search will redirects you to the Search page

Similarity based on on-line pair-wise alignments

The BioloMICSNet Software facilitates identifications by the perfomance of on-line pair-wise and probabilistic sequences (DNA and/or Proteins) identifications.

The following link : BioloMICS Sequence Pairwise Alignment will redirects you to the BioloMICS Sequence Pairwise Alignment page

Polyphasic online identification

The BioloMICSNet Software has facilitated perfomance of on-line polyphasic identifications since the first version produced in 1999. Depending on the databases and the criteria that are available, a wide range of characteristics can be entered, combined and analyzed to obtain an identification of an unknown. The more criteria used, the more likely the identification will be reliable. The current on-line version of the software also facilitates for the production of phenetic trees.

For a complete description on fields and algorithms used in the polyphasic identification :

The following link : BioloMICS Polyphasic Identification will redirects you to the BioloMICS Polyphasic Identification page

Deposit of user's data

BioloMICSNet users willing to deposit their data or to order items using the cart system, will have to register. We need to be able to contact the depositor/client For specific information (e.g. BioloMICSNet number, possible points of clarification, for example regarding the name, actual date of publication, etc), and we also need to ensure all entries are genuine.

To register for the first time follow the steps below:

1. Enter your email address (see Register New User), click on the 'Create New Profile' button to receive a provisional password by email (this is to make sure that the provided email is real and that you are the person that can open the given email).

2. Read your email and go to the Register menu again. Enter your email and password (obtained by email). Click on the "Login" button and access the BioloMICSNet profile form where personal information has to be entered. Change the password and personalize it. Click on the "Save profile" button. You will then be registered and ready to deposit new items (strains, species, etc) or to order items on-line via the Cart system.

Link your website

Software developers can connect their website to BioloMICSNet.

Basic address 1:
http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=V2&Descr=V3&Fields=V4&ExactMatch=V5

Basic address 2:
http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=V2&Rec=V6&Fields=V4&ExactMatch=V5

where,

V1: Database Name (see 'Database' block ' below) where to find the wanted record (see table below for more information)

V2: Table Layout Name (see 'Fields Code' block below) where to find the wanted record (see table below for more information)

V3: Name of the wanted record

V4: Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.: &Fields =All). To display only one field, just paste the code of the field next to the & Fields tag (ex.: &Fields =E1). To display several fields, use several & Fields tag (ex.: &Fields=E1&Fields=T4&Fields=P8). Only the fields that are not empty will be displayed. See table below for more information on fields codes.

V5: Exact match for the queries. Use T for true or F for False (ex.: &ExactMatch =T). Relevant if V3 (Name specified). 'ExactMatch=T' will search for record where Name equals the given value while 'ExactMatch=F' will search for records where Name contains the given value.

V6: Unique ID of a given record (ex.: &Rec =1)

Export database description
- Export to Excel
- Export to Word

Information details on Database : Mycosphaerella

Fields description for Layout : Mycosphaerella sensu lato teleomorphs

Field Caption	Field Name	Field Code	Field type
General information
	TempNumMB	E4	E : Text, administrative field
	Latitude, longitude of origin (type)	L1	L : GIS Location (latitude, longitude, altitude, precision)
	Current classification	E5	E : Text, administrative field
	Substrate	E6	E : Text, administrative field
	Host class, family	E7	E : Text, administrative field
	Species name_Mycobank	E1_Mycobank	U : URL
	Species name	E1	RLink : Link to one or more records
	Country of origin (type)	E2	E : Text, administrative field
	Host class, family	C1	C : Discrete data, multiple state
	Host genus	E3	E : Text, administrative field
	Substrate	C2	C : Discrete data, multiple state
	Spot colour	C3	C : Discrete data, multiple state
	Spot margin colour	C4	C : Discrete data, multiple state
	Infected host surface	T1	T : Discrete data, single state
Bibliography
	Bibliography	B1	RLink : Link to one or more records
Pictures
	Ascospore outlines_Link	P1_Link	FLink : Link to File
Hamathecium
	Hamathecium	T14	T : Discrete data, single state
	Hamathecium filaments	T15	T : Discrete data, single state
	Position of hamathecium filament	T16	T : Discrete data, single state
	Branching of hamathecium filaments	C10	C : Discrete data, multiple state
Ascoma
	Ascoma type	T2	T : Discrete data, single state
	Ascoma shape	T3	T : Discrete data, single state
	Original position of the ascoma	T4	T : Discrete data, single state
	Ascoma aggregation	T5	T : Discrete data, single state
	Stroma	T6	T : Discrete data, single state
	Subiculum	T7	T : Discrete data, single state
	Clypeus	T8	T : Discrete data, single state
	Ascoma size	C5	C : Discrete data, multiple state
	Ascoma wall	C6	C : Discrete data, multiple state
	Wall pigmentation	C7	C : Discrete data, multiple state
	Ostiole type	C8	C : Discrete data, multiple state
	Ostiole position	T9	T : Discrete data, single state
Ascus
	Ascus ring	T13	T : Discrete data, single state
	Number of ascospores in the ascus	S1	S : Continuous data range (Min,LP,HP,Max)
	Ascus shape	C9	C : Discrete data, multiple state
	Ascus tunica	T10	T : Discrete data, single state
	Iodine reaction of ascus tip	T11	T : Discrete data, single state
	Ascus tip	T12	T : Discrete data, single state
Ascospore
	Number of transverse ascospore septations	S2	S : Continuous data range (Min,LP,HP,Max)
	Number of longitudinal ascospore septations	S3	S : Continuous data range (Min,LP,HP,Max)
	Ascospore septation	T17	T : Discrete data, single state
	Type of ascospore septation	T18	T : Discrete data, single state
	Ascospore length (µm)	S4	S : Continuous data range (Min,LP,HP,Max)
	Ascospore width (µm)	S5	S : Continuous data range (Min,LP,HP,Max)
	Colour of mature ascospores	C11	C : Discrete data, multiple state
	Shape of ascospores	C12	C : Discrete data, multiple state
	Position of widest point of ascospores	T19	T : Discrete data, single state
	Ascospore constriction	T20	T : Discrete data, single state
	Position of first ascospore septum	T21	T : Discrete data, single state
	Thickness of ascospore septum	T22	T : Discrete data, single state
	Ascospore germ pores	T23	T : Discrete data, single state
	Number of ascospore germ pores	S6	S : Continuous data range (Min,LP,HP,Max)
	Ascospore gelatin outside wall	C13	C : Discrete data, multiple state
	Lumen of ascospore	C14	C : Discrete data, multiple state
	Ascospore ornamentation	C15	C : Discrete data, multiple state
	Ascospore wall thickness	T24	T : Discrete data, single state
	Ascospore curvature	C16	C : Discrete data, multiple state
	Ascospore upper end	T25	T : Discrete data, single state
	Ascospore lower end	T26	T : Discrete data, single state
Germination
	Ascospore germination	T27	T : Discrete data, single state
	Ascospore germination direction	T28	T : Discrete data, single state
	Colour of germinating ascospore	C17	C : Discrete data, multiple state
	Constriction of germinating ascospore	T29	T : Discrete data, single state
	Colour of germ tubes	C18	C : Discrete data, multiple state
	Curvature of germ tubes	T30	T : Discrete data, single state
DNA Sequences
	ITS	N1	NLink : Link to Sequence
	rDNA Large subunit	N2	NLink : Link to Sequence
	rDNA Smal subunit	N4	NLink : Link to Sequence
	Beta tubulin	N3	NLink : Link to Sequence

Examples of hyperlinks for Table Mycosphaerella sensu lato teleomorphs in Database Mycosphaerella

Example 1: Record #1 [Mycosphaerella abietis], Display all Fields

http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=Mycosphaerella sensu lato teleomorphs&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Mycosphaerella abietis' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=Mycosphaerella sensu lato teleomorphs&Name=Mycosphaerella abietis&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Mycosphaerella' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=Mycosphaerella sensu lato teleomorphs&Name=Mycosphaerella&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Mycosphaerella' , Display Field 'E4' (TempNumMB), Non Exact Match Searching

http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=Mycosphaerella sensu lato teleomorphs&Name=Mycosphaerella&Fields=E4&ExactMatch=F

Example 5: Record Name is 'Mycosphaerella aceris' , Display Field 'E4' (TempNumMB) and 'N3' (Beta tubulin) , Exact Match Searching

http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=Mycosphaerella sensu lato teleomorphs&Name=Mycosphaerella aceris&Fields=E4&Fields=N3&ExactMatch=T

Fields description for Layout : Anamorphs of Mycosphaerella

Field Caption	Field Name	Field Code	Field type
General information
	Species name_Mycobank	E1_Mycobank	U : URL
	Species name	E1	RLink : Link to one or more records
	Current classification	E2	E : Text, administrative field
	Country of origin (type)	E3	E : Text, administrative field
	Host genus	E4	E : Text, administrative field
	Host family	C1	C : Discrete data, multiple state
Pathology
	Leaf spot presence	T1	T : Discrete data, single state
	Spot colour	C2	C : Discrete data, multiple state
	Spot margin colour	C3	C : Discrete data, multiple state
	Position of conidia	T2	T : Discrete data, single state
Conidioma
	Conidioma	T3	T : Discrete data, single state
	Pycnidium diameter	S1	S : Continuous data range (Min,LP,HP,Max)
	Dark stroma cells	T4	T : Discrete data, single state
	Branching conidiophores	T5	T : Discrete data, single state
	Superficial hyphae	T6	T : Discrete data, single state
	Conidiophore colour	T8	T : Discrete data, single state
	Conidiophore ornamentation	T9	T : Discrete data, single state
Conidia
	Conidial scar	T7	T : Discrete data, single state
	Conidia septation	T10	T : Discrete data, single state
	Amount of conidia septation	T11	T : Discrete data, single state
	Conidia colour	C4	C : Discrete data, multiple state
	Conidia ornamentation	T12	T : Discrete data, single state
	Hilum	T13	T : Discrete data, single state
	Number of transverse septa	S2	S : Continuous data range (Min,LP,HP,Max)
	Number of longitudinal septa	S3	S : Continuous data range (Min,LP,HP,Max)
	Conidia shape	C5	C : Discrete data, multiple state
	Conidia curvature	T14	T : Discrete data, single state
	Conidia length	S4	S : Continuous data range (Min,LP,HP,Max)
	Conidia width	S5	S : Continuous data range (Min,LP,HP,Max)

Examples of hyperlinks for Table Anamorphs of Mycosphaerella in Database Mycosphaerella

Example 1: Record #1 [Asperisporium acori], Display all Fields

http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=Anamorphs of Mycosphaerella&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Asperisporium acori' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=Anamorphs of Mycosphaerella&Name=Asperisporium acori&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Asperisporium' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=Anamorphs of Mycosphaerella&Name=Asperisporium&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Asperisporium' , Display Field 'E1_Mycobank' (Species name_Mycobank), Non Exact Match Searching

http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=Anamorphs of Mycosphaerella&Name=Asperisporium&Fields=E1_Mycobank&ExactMatch=F

Example 5: Record Name is 'Asperisporium moringae' , Display Field 'E1_Mycobank' (Species name_Mycobank) and 'S5' (Conidia width) , Exact Match Searching

http://www.cbs.knaw.nl/Mycosphaerella/BioloMICS.aspx?Table=Anamorphs of Mycosphaerella&Name=Asperisporium moringae&Fields=E1_Mycobank&Fields=S5&ExactMatch=T

Contact(s) for Database : Mycosphaerella

The following link : BioloMICS Contact information will redirects you to the BioloMICS Contact information page

Disclaimer and Limitation of Liability:

BioAware makes no representation or warranty whatsoever regarding the performance, use or results of the software, including without limitation, any express or implied warranties, including without limitation, the implied warranties of merchant ability and fitness for a particular purpose. In no event shall BioAware be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including without limitation, procurement of substitute goods or services, loss of use, data, or profits, or business interruption) however caused and not withstanding any theory of liability, whether in contrast, strict liability, or tort (including negligence or otherwise) arising in any way out of the software, even if advised of the possibility or probality of such damage. BioAware shall beat no responsability for the accuracy or quality of information or other results (The Information) obtained through its provision of the software, nor the use or misuse of any information by any user of the information, unauthorized use of any information protected by intellectual property rights. The user acknowledges and agrees that BioAware is merely permitting access to the information supplied throught the software, and that the user is responsible for the accuracy, truthfulness and all other matters relating to such information. Further, the user acknowledges and agrees that the software is subject to interruption from time to time and the user's information may not be accessed by its intended user.