Morchella MLST database

Pairwise sequence alignment

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Pairwise sequence alignment parameters

Minimum similarity to keep results (0-100%):

Gap creation penalty (1-100):

Minimum overlap to keep results (0-100%):

Gap extension penalty (1-10):

Minimum overlap for rating reward (0-100%):

Word size (1-256):

Maximum alignments to display (1-1000):

Penalty for a nucleotide mismatch:

Select sorting mode:

Reward for a nucleotide match:

Select the reference(s) file(s) to be used for the alignment:

	Name	Location	Status	#Match(s) found
	MORCH	Local	Reachable		535.45	0	0
	FUNBOLD	http://www.fungalbarcoding.org/	Reachable		10476.969	3	0
	FUNCBS	http://www.cbs.knaw.nl/Collections/	Reachable		200614.746	3	0
	YEASTS	http://www.cbs.knaw.nl/Collections/	Reachable		5762.946	3	0
	Non-redundant GenBank	http://blast.ncbi.nlm.nih.gov/Blast.cgi	Reachable		0	0	19

Paste sequence to align:

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