Help on BioloMICSNet
How to search our databases
The BioloMICSNet Software facilitates interrogation of the available databases.
The Basic search allows you to search on any kind of field.
Should you need to build more complex queries, then the Advanced search (
) will allow you to customize the query.
The following link : BioloMICS Search
will redirect you to the Search page
Similarity based on on-line pair-wise alignments
The BioloMICSNet Software facilitates identifications by the performance of on-line
pair-wise and probabilistic sequences (DNA and/or Proteins) identifications.
The following link : BioloMICS Sequence Pairwise Alignment will redirect you to the BioloMICS Sequence Pairwise Alignment page
Polyphasic online identification
The BioloMICSNet Software has facilitated performance of on-line polyphasic identifications since the first version produced in 1999.
Depending on the databases and the criteria that are available, a wide range of characteristics can be entered, combined and analyzed to obtain an identification of an unknown.
The more criteria used, the more likely the identification will be reliable. The current on-line version of the software also facilitates for the production of phenetic trees.
For a complete description on fields and algorithms used in the polyphasic identification :
The following link : BioloMICS Polyphasic Identification will redirect you to the BioloMICS Polyphasic Identification page
Deposit of user's data
BioloMICSNet users willing to deposit their data or to order items using the cart system, will have to register.
We need to be able to contact the depositor/client For specific information (e.g. BioloMICSNet number, possible points of clarification,
for example regarding the name, actual date of publication, etc), and we also need to ensure all entries are genuine.
To register for the first time follow the steps below:
1. Enter your email address (see
Register New User), click on the 'Create New Profile' button to receive a provisional password by email (this is to make sure that the provided email is real and
that you are the person that can open the given email).
2. Read your email and go to the Register menu again.
Enter your email and password (obtained by email). Click on the "Login" button and access the BioloMICSNet profile form where personal information has to be entered.
Change the password and personalize it. Click on the "Save profile" button.
You will then be registered and ready to deposit new items (strains, species, etc) or to order items on-line via the Cart system.
Link your website
Software developers can connect their website to BioloMICSNet.
Basic address 1:
http://www.cbs.knaw.nl/Fusarium/BioloMICS.aspx?Table=V2&Descr=V3&Fields=V4&ExactMatch=V5
Basic address 2:
http://www.cbs.knaw.nl/Fusarium/BioloMICS.aspx?Table=V2&Rec=V6&Fields=V4&ExactMatch=V5
where,
V1:
Database Name (see 'Database' block ' below) where to find the wanted record (see table below for more information)
V2:
Table Layout Name (see 'Fields Code' block below) where to find the wanted record (see table below for more information)
V3:
Name of the wanted record
V4:
Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.:
&Fields
=All). To display only one field, just paste the code of the field next to the
&
Fields tag (ex.:
&Fields
=E1). To display several fields, use several
&
Fields tag (ex.:
&Fields=E1&Fields=T4&Fields=P8).
Only the fields that are not empty will be displayed. See table below for more information on fields codes.
V5:
Exact match for the queries. Use T for true or F for False (ex.:
&ExactMatch
=T). Relevant if V3 (Name specified). 'ExactMatch=T' will search for record where Name equals the given value while 'ExactMatch=F'
will search for records where Name contains the given value.
V6:
Unique ID of a given record (ex.:
&Rec
=1)
Information details on Database :
Fusarium MLST
Fields description for Layout : Fusarium
| General information | | | |
| | Species name | E4 | E : Text, administrative field |
| | Species complex | E2 | E : Text, administrative field |
| | MLST type | E3 | E : Text, administrative field |
| | Vegetative Compatibility Groups of Fusarium | E9 | E : Text, administrative field |
| | Equivalent numbers | E7 | E : Text, administrative field |
| | NRRL number | E140 | E : Text, administrative field |
| | Geographic origin | E8 | E : Text, administrative field |
| | Isolate source | E6 | E : Text, administrative field |
| | Notes | E10 | E : Text, administrative field |
| Sequences | | | |
| | Translation elongation factor 1 alpha gene (EF1) | N1 | NLink : Link to Sequence |
| | RNA polymerase I beta subunit gene (RPB1) | N2 | NLink : Link to Sequence |
| | RNA polymerase II beta subunit gene (RPB2) | N3 | NLink : Link to Sequence |
| | Calmodulin gene (CAL) | N5 | NLink : Link to Sequence |
| | beta-tubulin gene (TUBB) | N6 | NLink : Link to Sequence |
| | Histone gene | NLink109 | NLink : Link to Sequence |
| | IGS | NLink108 | NLink : Link to Sequence |
| | Internal transcribed spacers (ITS1 and ITS2) | N4 | NLink : Link to Sequence |
| | 28S ribosomal RNA large subunit (28S - LSU) | N7 | NLink : Link to Sequence |
| | Mitochondrial gene | NLink107 | NLink : Link to Sequence |
Contact(s) for Database :
Fusarium MLST
The following link : BioloMICS
Contact information will redirect you to the BioloMICS Contact information page
Search Service
Click
here for full description.
Disclaimer and Limitation of Liability:
BioAware makes no representation or warranty whatsoever regarding the performance, use or results of the software, including without limitation, any express or implied warranties, including without limitation, the implied warranties of merchant ability and fitness for a particular purpose. In no event shall BioAware be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including without limitation, procurement of substitute goods or services, loss of use, data, or profits, or business interruption) however caused and not withstanding any theory of liability, whether in contrast, strict liability, or tort (including negligence or otherwise) arising in any way out of the software, even if advised of the possibility or probality of such damage. BioAware shall beat no responsability for the accuracy or quality of information or other results (The Information) obtained through its provision of the software, nor the use or misuse of any information by any user of the information, unauthorized use of any information protected by intellectual property rights. The user acknowledges and agrees that BioAware is merely permitting access to the information supplied throught the software, and that the user is responsible for the accuracy, truthfulness and all other matters relating to such information. Further, the user acknowledges and agrees that the software is subject to interruption from time to time and the user's information may not be accessed by its intended user.