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5
Pairwise sequence alignment
I have read
the disclaimer
and I agree with the conditions and limitations associated with the usage of the software
Pairwise sequence alignment parameters
Minimum similarity to keep results (0-100%):
Gap creation penalty (1-100):
Minimum overlap to keep results (0-100%):
Gap extension penalty (1-10):
Minimum overlap for rating reward (0-100%):
Word size (1-256):
Maximum alignments to display (1-1000):
Penalty for a nucleotide mismatch:
select
-1
-2
-3
Select sorting mode:
select
Rating
Similarity
Probability
Reward for a nucleotide match:
select
1
2
3
Select the reference(s) file(s) to be used for the alignment:
Name
Location
Status
#Match(s) found
FUSARIUM
Local
Reachable
3250.631
0
0
FUNCBS
http://www.cbs.knaw.nl/Collections/
Reachable
200614.746
3
0
YEASTS
http://www.cbs.knaw.nl/Collections/
Reachable
5762.946
3
0
Paste sequence to align:
Pairwise alignment running; please wait ...
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