CBS Database

Help on BioloMICSNet

How to search our databases

The BioloMICSNet Software facilitates interrogation of the available databases. The Basic search allows you to search on any kind of field.

Should you need to build more complex queries, then the Advanced search ( ) will allow you to customize the query.

The following link : BioloMICS Search will redirect you to the Search page

Similarity based on on-line pair-wise alignments

The BioloMICSNet Software facilitates identifications by the performance of on-line pair-wise and probabilistic sequences (DNA and/or Proteins) identifications.

The following link : BioloMICS Sequence Pairwise Alignment will redirect you to the BioloMICS Sequence Pairwise Alignment page

Polyphasic online identification

The BioloMICSNet Software has facilitated performance of on-line polyphasic identifications since the first version produced in 1999. Depending on the databases and the criteria that are available, a wide range of characteristics can be entered, combined and analyzed to obtain an identification of an unknown. The more criteria used, the more likely the identification will be reliable. The current on-line version of the software also facilitates for the production of phenetic trees.

For a complete description on fields and algorithms used in the polyphasic identification :

The following link : BioloMICS Polyphasic Identification will redirect you to the BioloMICS Polyphasic Identification page

Deposit of user's data

BioloMICSNet users willing to deposit their data or to order items using the cart system, will have to register. We need to be able to contact the depositor/client For specific information (e.g. BioloMICSNet number, possible points of clarification, for example regarding the name, actual date of publication, etc), and we also need to ensure all entries are genuine.

To register for the first time follow the steps below:

1. Enter your email address (see Register New User), click on the 'Create New Profile' button to receive a provisional password by email (this is to make sure that the provided email is real and that you are the person that can open the given email).

2. Read your email and go to the Register menu again. Enter your email and password (obtained by email). Click on the "Login" button and access the BioloMICSNet profile form where personal information has to be entered. Change the password and personalize it. Click on the "Save profile" button. You will then be registered and ready to deposit new items (strains, species, etc) or to order items on-line via the Cart system.

Link your website

Software developers can connect their website to BioloMICSNet.

Basic address 1:
http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=V2&Descr=V3&Fields=V4&ExactMatch=V5

Basic address 2:
http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=V2&Rec=V6&Fields=V4&ExactMatch=V5

where,

V1: Database Name (see 'Database' block ' below) where to find the wanted record (see table below for more information)

V2: Table Layout Name (see 'Fields Code' block below) where to find the wanted record (see table below for more information)

V3: Name of the wanted record

V4: Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.: &Fields =All). To display only one field, just paste the code of the field next to the & Fields tag (ex.: &Fields =E1). To display several fields, use several & Fields tag (ex.: &Fields=E1&Fields=T4&Fields=P8). Only the fields that are not empty will be displayed. See table below for more information on fields codes.

V5: Exact match for the queries. Use T for true or F for False (ex.: &ExactMatch =T). Relevant if V3 (Name specified). 'ExactMatch=T' will search for record where Name equals the given value while 'ExactMatch=F' will search for records where Name contains the given value.

V6: Unique ID of a given record (ex.: &Rec =1)

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Information details on Database : CBS Database

Fields description for Layout : Growth media

Field Name	Field Code	Field type
Full name of medium	E1	E : Text, administrative field
Other name	E2	E : Text, administrative field
Method-recipe	E3	E : Text, administrative field
pH	E4	E : Text, administrative field
Sterilization conditions	E5	E : Text, administrative field
Remarks	E6	E : Text, administrative field
Ingredients	E7	E : Text, administrative field
References	E8	E : Text, administrative field

Examples of hyperlinks for Table Growth media in Database CBS Database

Example 1: Record #1 [AAA], Display all Fields

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Growth media&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'AAA' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Growth media&Name=AAA&Fields=All&ExactMatch=T

Example 3: Record Name containing 'AAA' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Growth media&Name=AAA&Fields=All&ExactMatch=F

Example 4: Record Name containing 'BARN' , Display Field 'E1' (Full name of medium), Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Growth media&Name=BARN&Fields=E1&ExactMatch=F

Example 5: Record Name is 'BARN' , Display Field 'E1' (Full name of medium) and 'E8' (References) , Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Growth media&Name=BARN&Fields=E1&Fields=E8&ExactMatch=T

Fields description for Layout : Mycobank

Field Caption	Field Name	Field Code	Field type
General information
	Summary	E3787	E : Text, administrative field
	Synonymy	E4060	E : Text, administrative field
	MycoBank #	MycoBankNr_	I : Internal Use
	Epithet	Epithet_	E : Text, administrative field
	Rank	Rank_Pt_	RLink : Link to one or more records
	Orthographic variant of	OrthVariantOf_Pt_	RLink : Link to one or more records
	Authors	Authors_	E : Text, administrative field
	Authors (abbreviated)	AuthorsAbbrev_	E : Text, administrative field
	Literature	Literature_Pt_	RLink : Link to one or more records
	Page #	LiteraturePageNr_	E : Text, administrative field
	Year of publication	NameYear_	H : DateTime (YYYYMMDDHHmmss)
	Name type	NameType_	T : Discrete data, 15 combinations of 4 independant states
	Gender	Gender_	T : Discrete data, 15 combinations of 4 independant states
	Date public	DatePublic_	H : DateTime (YYYYMMDDHHmmss)
	Name status	NameStatus_	T : Discrete data, 15 combinations of 4 independant states
	Comment on name status	NameStatusExplanation_	E : Text, administrative field
	Remarks	Remarks_	E : Text, administrative field
	Sanctioning ref.	SanctioningRef_	E : Text, administrative field
	Sanctioned by	SanctionedBy_	T : Discrete data, 15 combinations of 4 independant states
	Sanctioning name	SanctioningName_Pt_	RLink : Link to one or more records
	Validated by	ValidatedBy_Pt_	RLink : Link to one or more records
	Specimen	Specimen_Pt_	RLink : Link to one or more records
	Epitype	Epitype_Pt_	RLink : Link to one or more records
	Iconotype	Iconotype_Pt_	RLink : Link to one or more records
	Lectotype	Lectotype_Pt_	RLink : Link to one or more records
	Neotype	Neotype_Pt_	RLink : Link to one or more records
Classification and associated taxa
	Current name	CurrentName_Pt_	RLink : Link to one or more records
	Classification	Classification_	O : Ontology, classification field
	Type name	TypeName_Pt_	RLink : Link to one or more records
	Basionym	BasedOn_Pt_	RLink : Link to one or more records
	Obligate or homotypic synonyms	ObligateSynonyms_Pt_	RLink : Link to one or more records
	Anamorph synonyms	Anamorph_Pt_	RLink : Link to one or more records
	Teleomorph synonyms	Teleomorph_Pt_	RLink : Link to one or more records
	Facultative or heterotypic synonyms	FacultativeSynonyms_Pt_	RLink : Link to one or more records
Descriptions
	Description	Description_Pt_	RLink : Link to one or more records
	Protolog	Protolog_Pt_	RLink : Link to one or more records
Link out to external resources
	Other fungal links	ExternalLinks_	U : URL
	Bibliography links	U3732	U : URL
	General links	U3733	U : URL
	Molecular links	U3734	U : URL
	Specimens and strains links	U3735	U : URL
Files
	Associated files	Files_Pt_	FLink : Link to File

Examples of hyperlinks for Table Mycobank in Database CBS Database

Example 1: Record #1 [Abortiporus biennis], Display all Fields

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Mycobank&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Abortiporus biennis' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Mycobank&Name=Abortiporus biennis&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Abortiporus' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Mycobank&Name=Abortiporus&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Absidia' , Display Field 'E3787' (Summary), Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Mycobank&Name=Absidia&Fields=E3787&ExactMatch=F

Example 5: Record Name is 'Absidia cylindrospora var. cylindrospora' , Display Field 'E3787' (Summary) and 'Files_Pt_' (Associated files) , Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Mycobank&Name=Absidia cylindrospora var. cylindrospora&Fields=E3787&Fields=Files_Pt_&ExactMatch=T

Fields description for Layout : Yeasts 2011

Field Caption	Field Name	Field Code	Field type
Taxonomy, classification & strains
	Link to MycoBank	E6_Mycobank	U : URL
	Link to previous version of yeast database	RLink3740	RLink : Link to one or more records
	Associated species	RLink3775	RLink : Link to one or more records
	Authors	E629	E : Text, administrative field
	Year	H630	H : DateTime (YYYYMMDDHHmmss)
Strains
	Type strain	RLink3624	RLink : Link to one or more records
	Type species	E656	RLink : Link to one or more records
	Type species of genus	E659	RLink : Link to one or more records
	Other strains	RLink3783	RLink : Link to one or more records
Classification
	Division	E3776	E : Text, administrative field
	Subdivision	E3777	E : Text, administrative field
	Class	E3778	E : Text, administrative field
	Subclass	E3779	E : Text, administrative field
	Order	E3780	E : Text, administrative field
	Family	E3781	E : Text, administrative field
	Genus	RLink3774	RLink : Link to one or more records
Morphology
	Colony texture	C3	C : Discrete data, multiple state
	Colony appearance	C2	C : Discrete data, multiple state
	Colony colour	C1	C : Discrete data, multiple state
	Colony margin	T2	T : Discrete data, 15 combinations of 4 independant states
	Reddish diffusing pigment	T1	T : Discrete data, 15 combinations of 4 independant states
	Filaments	T3	T : Discrete data, 15 combinations of 4 independant states
	Cell shape	C5	C : Discrete data, multiple state
Sexuality
	Asexual reproduction	C4	C : Discrete data, multiple state
	Conjugation	C7	C : Discrete data, multiple state
	Sexual reproduction	T43	T : Discrete data, 15 combinations of 4 independant states
	Teliospores	T12	T : Discrete data, 15 combinations of 4 independant states
	Asci shape	T5	T : Discrete data, 15 combinations of 4 independant states
	Asci evanescence	T4	T : Discrete data, 15 combinations of 4 independant states
	Number of ascospores per ascus	S1	S : Continuous data range (Min,LP,HP,Max)
	Ascospores shape	C6	C : Discrete data, multiple state
	Ascospores with gelatinous sheath	T6	T : Discrete data, 15 combinations of 4 independant states
	Ascospores with a groove	T7	T : Discrete data, 15 combinations of 4 independant states
	Basidia shape	T9	T : Discrete data, 15 combinations of 4 independant states
	Basidia catenate-solitary	T11	T : Discrete data, 15 combinations of 4 independant states
	Basidia septation	T8	T : Discrete data, 15 combinations of 4 independant states
Physiology
Fermentations
	D-Glucose (F1)	T21	T : Discrete data, 15 combinations of 4 independant states
	D-Galactose (F2)	T22	T : Discrete data, 15 combinations of 4 independant states
	Maltose (F3)	T23	T : Discrete data, 15 combinations of 4 independant states
	Me a-D-Glucoside (F4)	T24	T : Discrete data, 15 combinations of 4 independant states
	Sucrose (F5)	T25	T : Discrete data, 15 combinations of 4 independant states
	a,a-Trehalose (F6)	T26	T : Discrete data, 15 combinations of 4 independant states
	Melibiose (F7)	T27	T : Discrete data, 15 combinations of 4 independant states
	Lactose (F8)	T28	T : Discrete data, 15 combinations of 4 independant states
	Cellobiose (F9)	T29	T : Discrete data, 15 combinations of 4 independant states
	Melezitose (F10)	T30	T : Discrete data, 15 combinations of 4 independant states
	Raffinose (F11)	T31	T : Discrete data, 15 combinations of 4 independant states
	Inulin (F12)	T32	T : Discrete data, 15 combinations of 4 independant states
	Starch (F13)	T33	T : Discrete data, 15 combinations of 4 independant states
	D-Xylose (F14)	T34	T : Discrete data, 15 combinations of 4 independant states
Assimilations & growth tests
	Temperatures growths tests	C8	C : Discrete data, multiple state
	Assimilations	A623	A : Array of discrete data
	Yeasts physiological data	A1	A : Array of discrete data
	Acid acetic production (M2)	T38	T : Discrete data, 15 combinations of 4 independant states
	Diazonium Blue B reaction (M4)	T40	T : Discrete data, 15 combinations of 4 independant states
	Coenzyme Q system	D1	D : Continuous data, single value
DNA
	26S Remarks	E3786	E : Text, administrative field
	rDNA sequences 26S	N1	NLink : Link to Sequence
	rDNA sequences 18S	N2	NLink : Link to Sequence
	ITS Remarks	E3785	E : Text, administrative field
	rDNA sequences ITS	N3	NLink : Link to Sequence
	Actin	NLink620	NLink : Link to Sequence
	EF1a	NLink622	NLink : Link to Sequence
	Beta tubulin	NLink624	NLink : Link to Sequence
	RPB1	NLink625	NLink : Link to Sequence
	RPB2	NLink626	NLink : Link to Sequence
	Calmodulin	NLink627	NLink : Link to Sequence
	Miscellaneous sequences	N4	NLink : Link to Sequence
	Molecular % G+C (Average)	S621	S : Continuous data range (Min,LP,HP,Max)
	Sequences URLs_Url	P4_Url	U : URL

Examples of hyperlinks for Table Yeasts 2011 in Database CBS Database

Example 1: Record #1 [Acaromyces], Display all Fields

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Yeasts 2011&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Acaromyces' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Yeasts 2011&Name=Acaromyces&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Acaromyces' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Yeasts 2011&Name=Acaromyces&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Ambrosiozyma' , Display Field 'E6_Mycobank' (Link to MycoBank), Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Yeasts 2011&Name=Ambrosiozyma&Fields=E6_Mycobank&ExactMatch=F

Example 5: Record Name is 'Ambrosiozyma cicatricosa' , Display Field 'E6_Mycobank' (Link to MycoBank) and 'P4_Url' (Sequences URLs_Url) , Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Yeasts 2011&Name=Ambrosiozyma cicatricosa&Fields=E6_Mycobank&Fields=P4_Url&ExactMatch=T

Fields description for Layout : NCCB Media

Field Name	Field Code	Field type
Medium number	E2558	E : Text, administrative field
Other name	E2559	E : Text, administrative field
Method-recipe	E2560	E : Text, administrative field
pH	E2561	E : Text, administrative field
Sterilization conditions	E2562	E : Text, administrative field
Remarks	E2563	E : Text, administrative field
Ingredients	E2564	E : Text, administrative field
References	E2565	E : Text, administrative field

Examples of hyperlinks for Table NCCB Media in Database CBS Database

Example 1: Record #1 [Mannitol agar], Display all Fields

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB Media&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Mannitol agar' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB Media&Name=Mannitol agar&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Mannitol' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB Media&Name=Mannitol&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Beef' , Display Field 'E2558' (Medium number), Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB Media&Name=Beef&Fields=E2558&ExactMatch=F

Example 5: Record Name is 'Beef extract agar + 2% glycerol' , Display Field 'E2558' (Medium number) and 'E2565' (References) , Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB Media&Name=Beef extract agar + 2% glycerol&Fields=E2558&Fields=E2565&ExactMatch=T

Fields description for Layout : NCCB Names

Field Name	Field Code	Field type
DSMZ Record #	I3789	I : Internal Use
Authors	E3149	E : Text, administrative field
Status	E3150	E : Text, administrative field
IJSBRef	E3151	E : Text, administrative field
Type strain	E3152	E : Text, administrative field
Hazard code	E3153	E : Text, administrative field
Reference	T3791	T : Discrete data, 15 combinations of 4 independant states
Risk group	C4063	C : Discrete data, multiple state
Current name	RLink3154	RLink : Link to one or more records
Associated NCCB strains	E6	RLink : Link to one or more records
History of names	E3790	E : Text, administrative field
Remarks	E3155	E : Text, administrative field

Examples of hyperlinks for Table NCCB Names in Database CBS Database

Example 1: Record #1 [Actinomadura roseoviolacea], Display all Fields

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB Names&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Actinomadura roseoviolacea' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB Names&Name=Actinomadura roseoviolacea&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Actinomadura' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB Names&Name=Actinomadura&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Methanomicrococcus' , Display Field 'I3789' (DSMZ Record #), Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB Names&Name=Methanomicrococcus&Fields=I3789&ExactMatch=F

Example 5: Record Name is 'Methanomicrococcus sp.' , Display Field 'I3789' (DSMZ Record #) and 'E3155' (Remarks) , Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB Names&Name=Methanomicrococcus sp.&Fields=I3789&Fields=E3155&ExactMatch=T

Fields description for Layout : NCCB strains internet

Field Caption	Field Name	Field Code	Field type
General information
Taxonomy
	Taxonomic information	E6	RLink : Link to one or more records
	Species name	E1	E : Text, administrative field
	Other names	E15	E : Text, administrative field
	Status of the strain	E13	E : Text, administrative field
Collections
	Other collections	E12	E : Text, administrative field
	Other numbers	E16	E : Text, administrative field
	Variety	E7	E : Text, administrative field
	Date received	E9	H : DateTime (YYYYMMDDHHmmss)
	Accession date	E10	H : DateTime (YYYYMMDDHHmmss)
	Deposited by	E22	E : Text, administrative field
	Isolated from	E3239	E : Text, administrative field
	Location	E18	E : Text, administrative field
	History	E23	E : Text, administrative field
	Remarks	E24	E : Text, administrative field
	Restrictions	E38	E : Text, administrative field
	Supply	T3271	T : Discrete data, 15 combinations of 4 independant states
	Price per culture	D3272	D : Continuous data, single value
Biosafety and restrictions
	Pathogenicity	E3260	E : Text, administrative field
	Remarks pathogenicity	E3261	E : Text, administrative field
	GMO	T3300	T : Discrete data, 15 combinations of 4 independant states
Media and growth conditions
	Conditions for growth	E63	E : Text, administrative field
	Temperatures for growth	E3232	E : Text, administrative field
	Liquid media	RLink3269	RLink : Link to one or more records
	Solid media	RLink3223	RLink : Link to one or more records
	Remarks on conditions	E43	E : Text, administrative field
Miscellaneous properties
	Bioluminescence	E3202	E : Text, administrative field
	Applications	E3262	E : Text, administrative field
Genetics
	Genotype	E3263	E : Text, administrative field
	Plasmids	E35	E : Text, administrative field
	Mutant	E3252	E : Text, administrative field
	Sexual state	E3256	E : Text, administrative field
	Phages	E3288	E : Text, administrative field
	Remarks plasmids/phages	E3299	E : Text, administrative field
DNA
	Genbank number	U3348	U : URL
Bibliography
	Literature	E25	E : Text, administrative field

Examples of hyperlinks for Table NCCB strains internet in Database CBS Database

Example 1: Record #1284 [CBS 259.72], Display all Fields

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB strains internet&Rec=1284&Fields=All&ExactMatch=T

Example 2: Record Name is 'CBS 259.72' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB strains internet&Name=CBS 259.72&Fields=All&ExactMatch=T

Example 3: Record Name containing 'CBS' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB strains internet&Name=CBS&Fields=All&ExactMatch=F

Example 4: Record Name containing 'CBS' , Display Field 'E6' (Taxonomic information), Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB strains internet&Name=CBS&Fields=E6&ExactMatch=F

Example 5: Record Name is 'CBS 708.70' , Display Field 'E6' (Taxonomic information) and 'E25' (Literature) , Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB strains internet&Name=CBS 708.70&Fields=E6&Fields=E25&ExactMatch=T

Fields description for Layout : NCCB plasmid internet

Field Caption	Field Name	Field Code	Field type
General information
Collections
	NCCB number	E3050	E : Text, administrative field
	Element type	T3051	T : Discrete data, 15 combinations of 4 independant states
	Other culture collection nrs	E3104	E : Text, administrative field
	Accession date	H3059	H : DateTime (YYYYMMDDHHmmss)
	Deposited by	E3060	E : Text, administrative field
	Distributed in	E3061	E : Text, administrative field
	Restricted distribution	T3062	T : Discrete data, 15 combinations of 4 independant states
	Naturally occurring	T3063	T : Discrete data, 15 combinations of 4 independant states
	Constructed from	E3065	E : Text, administrative field
	Constructed/isolated by	E3064	E : Text, administrative field
	Literature	E3106	E : Text, administrative field
	History of deposition	E3066	E : Text, administrative field
	Scorable phenotype	E3109	E : Text, administrative field
	Transfer ability	T3088	T : Discrete data, 15 combinations of 4 independant states
	Replicons	E3108	E : Text, administrative field
	Copy number	E3105	E : Text, administrative field
	Molecular weight (in kb)	D3102	D : Continuous data, single value
	Markers present in insert	E3101	E : Text, administrative field
	Sequence	E3093	E : Text, administrative field
	Start codon present	T3097	T : Discrete data, 15 combinations of 4 independant states
	Remarks on properties	E3098	E : Text, administrative field
	Mobility	T3099	T : Discrete data, 15 combinations of 4 independant states
	Vector host range	E3114	E : Text, administrative field
	Usage	E3122	E : Text, administrative field
	Supply	T3120	T : Discrete data, 15 combinations of 4 independant states
	Host for propagation	E3067	E : Text, administrative field
	Propagation protocol	E3070	E : Text, administrative field
	Original host	E3069	E : Text, administrative field
	Lysogenic	T3075	T : Discrete data, 15 combinations of 4 independant states
	Plaque forming phage	T3076	T : Discrete data, 15 combinations of 4 independant states
	Clear plaque morphology	T3077	T : Discrete data, 15 combinations of 4 independant states
	Cell surface receptor	E3079	E : Text, administrative field
	Minimum packing capacity (in kb)	E3080	E : Text, administrative field
	Maximum packing capacity (in kb)	E3081	E : Text, administrative field
	Nucleic acid type DNA	T3082	T : Discrete data, 15 combinations of 4 independant states
	Nucleic acid type RNA	T3083	T : Discrete data, 15 combinations of 4 independant states
	Nucleic acid type double stranded	T3084	T : Discrete data, 15 combinations of 4 independant states
	Nucleic acid type single stranded	T3085	T : Discrete data, 15 combinations of 4 independant states
	Nucleic acid type circular	T3086	T : Discrete data, 15 combinations of 4 independant states
	Unique restriction sites	E3147	E : Text, administrative field
	Non-unique restriction sites	E3148	E : Text, administrative field
	Promoter	E3094	E : Text, administrative field
	Miscellaneous uses	E3118	E : Text, administrative field
	Transcription terminator	E3095	E : Text, administrative field
	Translation initiation region	E3096	E : Text, administrative field
	Price	D3381	D : Continuous data, single value
Biosafety and restrictions
	GMO	T3124	T : Discrete data, 15 combinations of 4 independant states
Media and growth conditions
	Medium	RLink3112	RLink : Link to one or more records

Examples of hyperlinks for Table NCCB plasmid internet in Database CBS Database

Example 1: Record #1 [pLV57], Display all Fields

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB plasmid internet&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'pLV57' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB plasmid internet&Name=pLV57&Fields=All&ExactMatch=T

Example 3: Record Name containing 'pLV57' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB plasmid internet&Name=pLV57&Fields=All&ExactMatch=F

Example 4: Record Name containing 'pACYC177' , Display Field 'E3050' (NCCB number), Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB plasmid internet&Name=pACYC177&Fields=E3050&ExactMatch=F

Example 5: Record Name is 'pACYC177' , Display Field 'E3050' (NCCB number) and 'RLink3112' (Medium) , Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=NCCB plasmid internet&Name=pACYC177&Fields=E3050&Fields=RLink3112&ExactMatch=T

Fields description for Layout : CBS strain database

Field Caption	Field Name	Field Code	Field type
General information
Taxonomy
	Taxon name	TRLink1634	RLink : Link to one or more records
	Name confidence	T558	T : Discrete data, 15 combinations of 4 independant states
	Name changes	E24	E : Text, administrative field
	Type of organism	T1122	T : Discrete data, 15 combinations of 4 independant states
	Status of the strain	E13	E : Text, administrative field
Collections
	Other collections	E12	E : Text, administrative field
	Other strain numbers (personal numbers)	E560	E : Text, administrative field
	History	E23	E : Text, administrative field
	Herbarium number	E561	E : Text, administrative field
Biosafety and restrictions
	Biological Safety Level	T1389	T : Discrete data, 15 combinations of 4 independant states
	Human pathogenicity code	T728	T : Discrete data, 15 combinations of 4 independant states
	Pathogenicity	E731	E : Text, administrative field
	Plant pathogenicity code	T729	T : Discrete data, 15 combinations of 4 independant states
	Remarks pathogenicity	E732	E : Text, administrative field
	Code toxicity	T730	T : Discrete data, 15 combinations of 4 independant states
	GMO	T1700	T : Discrete data, 15 combinations of 4 independant states
	Precautions and restrictions	E7	E : Text, administrative field
Origin
	Substrate of isolation	E15	E : Text, administrative field
	Category of substrate	E16	E : Text, administrative field
	Habitat	E719	E : Text, administrative field
	Country	RLink564	RLink : Link to one or more records
	Locality	E18	E : Text, administrative field
	Latitude, longitude coordinates where collected	L1	L : GIS Location (latitude, longitude, altitude, precision)
	Collected by	E566	E : Text, administrative field
	Collectors number	E720	E : Text, administrative field
	Isolated by	E19	E : Text, administrative field
	Identified by	E21	E : Text, administrative field
	Deposited by	E22	E : Text, administrative field
	Substrate (including host)	E562	E : Text, administrative field
Miscellaneous information
	Public remarks	E1388	E : Text, administrative field
	Miscellaneous information	E38	E : Text, administrative field
	Miscellaneous properties	E735	E : Text, administrative field
	Chemistry	E734	E : Text, administrative field
	Applications	E733	E : Text, administrative field
	Vegetative compatibility	E726	E : Text, administrative field
	Hybrid	E725	E : Text, administrative field
	Mutant	E723	E : Text, administrative field
	Mutation method	E724	E : Text, administrative field
	Price per culture	D1126	D : Continuous data, single value
	Predicted taxon name by ITS sequences	E2941	E : Text, administrative field
	LSU barcode information	T1871	T : Discrete data, 15 combinations of 4 independant states
	ITS barcode information	T1872	T : Discrete data, 15 combinations of 4 independant states
	Lims DNA extracts	RLink1298_back	RLink : Link to one or more records
Media and growth conditions
	Medium for growth	RLink355	RLink : Link to one or more records
	Conditions for growth (on solid media)	E63	E : Text, administrative field
	Temperatures growths tests	C8	C : Discrete data, multiple state
	Temperature, pH, Salinity & Ethanol information	E39	E : Text, administrative field
Morphology
Macro-morphology
	Reddish diffusing pigment	T1	T : Discrete data, 15 combinations of 4 independant states
	Colony margin	T2	T : Discrete data, 15 combinations of 4 independant states
	Colony colour	C1	C : Discrete data, multiple state
	Colony appearance	C2	C : Discrete data, multiple state
	Colony texture	C3	C : Discrete data, multiple state
Micro-mophology
	Filaments	T3	T : Discrete data, 15 combinations of 4 independant states
	Asexual reproduction	C4	C : Discrete data, multiple state
	Cell shape	C5	C : Discrete data, multiple state
Sexuality
	Number of ascospores per ascus	S1	S : Continuous data range (Min,LP,HP,Max)
	Asci evanescence	T4	T : Discrete data, 15 combinations of 4 independant states
	Asci shape	T5	T : Discrete data, 15 combinations of 4 independant states
	Ascospores with gelatinous sheath	T6	T : Discrete data, 15 combinations of 4 independant states
	Ascospores with a groove	T7	T : Discrete data, 15 combinations of 4 independant states
	Basidia septation	T8	T : Discrete data, 15 combinations of 4 independant states
	Basidia shape	T9	T : Discrete data, 15 combinations of 4 independant states
	Basidia catenate-solitary	T11	T : Discrete data, 15 combinations of 4 independant states
	Teliospores	T12	T : Discrete data, 15 combinations of 4 independant states
	Sexual reproduction	T43	T : Discrete data, 15 combinations of 4 independant states
	Ascospores shape	C6	C : Discrete data, multiple state
	Conjugation	C7	C : Discrete data, multiple state
	Conditions for sporulation	E43	E : Text, administrative field
	Medium for sporulation	RLink570	RLink : Link to one or more records
	Race	E559	E : Text, administrative field
Physiology
Fermentation
	D-Glucose (F1)	T21	T : Discrete data, 15 combinations of 4 independant states
	D-Galactose (F2)	T22	T : Discrete data, 15 combinations of 4 independant states
	Maltose (F3)	T23	T : Discrete data, 15 combinations of 4 independant states
	Me a-D-Glucoside (F4)	T24	T : Discrete data, 15 combinations of 4 independant states
	Sucrose (F5)	T25	T : Discrete data, 15 combinations of 4 independant states
	a,a-Trehalose (F6)	T26	T : Discrete data, 15 combinations of 4 independant states
	Melibiose (F7)	T27	T : Discrete data, 15 combinations of 4 independant states
	Lactose (F8)	T28	T : Discrete data, 15 combinations of 4 independant states
	Cellobiose (F9)	T29	T : Discrete data, 15 combinations of 4 independant states
	Melezitose (F10)	T30	T : Discrete data, 15 combinations of 4 independant states
	Raffinose (F11)	T31	T : Discrete data, 15 combinations of 4 independant states
	Inulin (F12)	T32	T : Discrete data, 15 combinations of 4 independant states
	Starch (F13)	T33	T : Discrete data, 15 combinations of 4 independant states
	D-Xylose (F14)	T34	T : Discrete data, 15 combinations of 4 independant states
Assimilation-Growth
	50% D-Glucose (O4)	T35	T : Discrete data, 15 combinations of 4 independant states
	60% D-Glucose (O5)	T36	T : Discrete data, 15 combinations of 4 independant states
	Starch formation (M1)	T37	T : Discrete data, 15 combinations of 4 independant states
	Acid acetic production (M2)	T38	T : Discrete data, 15 combinations of 4 independant states
	Urea hydrolysis (M3)	T39	T : Discrete data, 15 combinations of 4 independant states
	Diazonium Blue B reaction (M4)	T40	T : Discrete data, 15 combinations of 4 independant states
	Methanol (C41)	T41	T : Discrete data, 15 combinations of 4 independant states
	Ethanol (C42)	T42	T : Discrete data, 15 combinations of 4 independant states
	Yeasts physiological data	A1	A : Array of discrete data
CoQ
	Coenzyme Q system	D1	D : Continuous data, single value
Bibliography
	Other bibliographic data	E17	E : Text, administrative field
	Bibliography	B1	RLink : Link to one or more records
	Provisional bibliography	E530	E : Text, administrative field
DNA
Other information
	GC Data	E28	E : Text, administrative field
	Plasmids	E35	E : Text, administrative field
Sequences
	rDNA sequences 26S	N1	NLink : Link to Sequence
	rDNA sequences 18S	N2	NLink : Link to Sequence
	rDNA sequences ITS	N3	NLink : Link to Sequence
	Miscellaneous sequences	N4	NLink : Link to Sequence
	Actin	N5	NLink : Link to Sequence
	RPB1	N6	NLink : Link to Sequence
	RPB2	N7	NLink : Link to Sequence
	Elongation Factor 1	N8	NLink : Link to Sequence
	Beta tubuline	N9	NLink : Link to Sequence
	Calmodulin	NLink2508	NLink : Link to Sequence
Pictures
	Pictures_Link	P1_Link	FLink : Link to File
	Pictures from Linda Barnett_Link	P5_Link	FLink : Link to File
	Link to pictures of Linda Barnett (NCYC website)_Url	P6_Url	U : URL

Examples of hyperlinks for Table CBS strain database in Database CBS Database

Example 1: Record #1 [CBS 14], Display all Fields

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=CBS strain database&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'CBS 14' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=CBS strain database&Name=CBS 14&Fields=All&ExactMatch=T

Example 3: Record Name containing 'CBS' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=CBS strain database&Name=CBS&Fields=All&ExactMatch=F

Example 4: Record Name containing 'CBS' , Display Field 'TRLink1634' (Taxon name), Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=CBS strain database&Name=CBS&Fields=TRLink1634&ExactMatch=F

Example 5: Record Name is 'CBS 74' , Display Field 'TRLink1634' (Taxon name) and 'P6_Url' (Link to pictures of Linda Barnett (NCYC website)_Url) , Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=CBS strain database&Name=CBS 74&Fields=TRLink1634&Fields=P6_Url&ExactMatch=T

Fields description for Layout : Bibliography

Field Caption	Field Name	Field Code	Field type
	Location	E4082	E : Text, administrative field
	Authors	E1	E : Text, administrative field
	Authors book	E2	E : Text, administrative field
Editors
	Edition	E4073	E : Text, administrative field
	Editors	E3	E : Text, administrative field
	Publisher	E4077	E : Text, administrative field
	Series editors	E4079	E : Text, administrative field
	Series title	E4078	E : Text, administrative field
	City	E4076	E : Text, administrative field
	Year	H1	H : DateTime (YYYYMMDDHHmmss)
	Start page	E4074	E : Text, administrative field
	End page	E4075	E : Text, administrative field
	Page	E4	E : Text, administrative field
	Collection	E5	E : Text, administrative field
	ISBN	E6	E : Text, administrative field
	Num_	E7	E : Text, administrative field
	NumB	E8	E : Text, administrative field
	ISSN	E9	E : Text, administrative field
	Volume	E10	E : Text, administrative field
	Keywords	E11	E : Text, administrative field
	Edit_Ref	E12	E : Text, administrative field
	Revue	E13	E : Text, administrative field
	Abstracts	E14	E : Text, administrative field
	Url	E15	E : Text, administrative field
	Journal	RLink523	RLink : Link to one or more records
	Pubmed	U804	U : URL
	Document Reference #	E3788	E : Text, administrative field
	CBS Biblio Ref ID	E4072	E : Text, administrative field
	CBS Biblio reference number	E4081	E : Text, administrative field
	Remarks/Notes	E4080	E : Text, administrative field
	Languages	E4083	E : Text, administrative field
	Number of copies	E4084	I : Internal Use

Examples of hyperlinks for Table Bibliography in Database CBS Database

Example 1: Record #1 [Intérêt systématique de la recherche de l'uréase chez les levures et organismes levuriformes], Display all Fields

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Bibliography&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Intérêt systématique de la recherche de l'uréase chez les levures et organismes levuriformes' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Bibliography&Name=Intérêt systématique de la recherche de l'uréase chez les levures et organismes levuriformes&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Intérêt' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Bibliography&Name=Intérêt&Fields=All&ExactMatch=F

Example 4: Record Name containing 'The' , Display Field 'E4082' (Location), Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Bibliography&Name=The&Fields=E4082&ExactMatch=F

Example 5: Record Name is 'The use of stored frozen yeast starter in wine production' , Display Field 'E4082' (Location) and 'E4084' (Number of copies) , Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Bibliography&Name=The use of stored frozen yeast starter in wine production&Fields=E4082&Fields=E4084&ExactMatch=T

Fields description for Layout : Yeasts species

Field Caption	Field Name	Field Code	Field type
General information
	Remarks	E1	E : Text, administrative field
	Taxonomic information	E6	RLink : Link to one or more records
	Link to yeast book 2011	RLink3740	RLink : Link to one or more records
Sexuality
	Number of ascospores per ascus	S1	S : Continuous data range (Min,LP,HP,Max)
	Asci evanescence	T4	T : Discrete data, 15 combinations of 4 independant states
	Asci shape	T5	T : Discrete data, 15 combinations of 4 independant states
	Ascospores with gelatinous sheath	T6	T : Discrete data, 15 combinations of 4 independant states
	Ascospores with a groove	T7	T : Discrete data, 15 combinations of 4 independant states
	Basidia septation	T8	T : Discrete data, 15 combinations of 4 independant states
	Basidia shape	T9	T : Discrete data, 15 combinations of 4 independant states
	Basidia catenate-solitary	T11	T : Discrete data, 15 combinations of 4 independant states
	Teliospores	T12	T : Discrete data, 15 combinations of 4 independant states
	Sexual reproduction	T43	T : Discrete data, 15 combinations of 4 independant states
	Ascospores shape	C6	C : Discrete data, multiple state
	Conjugation	C7	C : Discrete data, multiple state
	Conditions for sporulation	E43	E : Text, administrative field
Morphology
Macro-morphology
	Reddish diffusing pigment	T1	T : Discrete data, 15 combinations of 4 independant states
	Colony margin	T2	T : Discrete data, 15 combinations of 4 independant states
	Colony colour	C1	C : Discrete data, multiple state
	Colony appearance	C2	C : Discrete data, multiple state
	Colony texture	C3	C : Discrete data, multiple state
	Conditions for growth (on solid media)	E63	E : Text, administrative field
Micro-mophology
	Filaments	T3	T : Discrete data, 15 combinations of 4 independant states
	Asexual reproduction	C4	C : Discrete data, multiple state
	Cell shape	C5	C : Discrete data, multiple state
Physiology
Fermentation
	D-Glucose (F1)	T21	T : Discrete data, 15 combinations of 4 independant states
	D-Galactose (F2)	T22	T : Discrete data, 15 combinations of 4 independant states
	Maltose (F3)	T23	T : Discrete data, 15 combinations of 4 independant states
	Me a-D-Glucoside (F4)	T24	T : Discrete data, 15 combinations of 4 independant states
	Sucrose (F5)	T25	T : Discrete data, 15 combinations of 4 independant states
	a,a-Trehalose (F6)	T26	T : Discrete data, 15 combinations of 4 independant states
	Melibiose (F7)	T27	T : Discrete data, 15 combinations of 4 independant states
	Lactose (F8)	T28	T : Discrete data, 15 combinations of 4 independant states
	Cellobiose (F9)	T29	T : Discrete data, 15 combinations of 4 independant states
	Melezitose (F10)	T30	T : Discrete data, 15 combinations of 4 independant states
	Raffinose (F11)	T31	T : Discrete data, 15 combinations of 4 independant states
	Inulin (F12)	T32	T : Discrete data, 15 combinations of 4 independant states
	Starch (F13)	T33	T : Discrete data, 15 combinations of 4 independant states
	D-Xylose (F14)	T34	T : Discrete data, 15 combinations of 4 independant states
Assimilation-Growth
	50% D-Glucose (O4)	T35	T : Discrete data, 15 combinations of 4 independant states
	60% D-Glucose (O5)	T36	T : Discrete data, 15 combinations of 4 independant states
	Starch formation (M1)	T37	T : Discrete data, 15 combinations of 4 independant states
	Acid acetic production (M2)	T38	T : Discrete data, 15 combinations of 4 independant states
	Urea hydrolysis (M3)	T39	T : Discrete data, 15 combinations of 4 independant states
	Diazonium Blue B reaction (M4)	T40	T : Discrete data, 15 combinations of 4 independant states
	Methanol (C41)	T41	T : Discrete data, 15 combinations of 4 independant states
	Ethanol (C42)	T42	T : Discrete data, 15 combinations of 4 independant states
	Yeasts physiological data	A1	A : Array of discrete data
	Absorbance values from yeast microplate	M1	M : Vector of S fields
	Physiology classical method	A2	A : Array of discrete data
CoQ
	Coenzyme Q system	D1	D : Continuous data, single value
Temperatures
	Temperature, pH, Salinity & Ethanol information	E39	E : Text, administrative field
	Temperatures growths tests	C8	C : Discrete data, multiple state
Bibliography
	Other bibliographic data	E17	E : Text, administrative field
	Bibliography	B1	RLink : Link to one or more records
DNA
Other information
	GC Data	E28	E : Text, administrative field
	Plasmids	E35	E : Text, administrative field
Sequences
	rDNA sequences 26S	N1	NLink : Link to Sequence
	rDNA sequences 18S	N2	NLink : Link to Sequence
	rDNA sequences ITS	N3	NLink : Link to Sequence
	Miscellaneous sequences	N4	NLink : Link to Sequence
	Original sequence files_Link	P2_Link	FLink : Link to File
	Sequences URLs_Url	P4_Url	U : URL
	Actin	N5	NLink : Link to Sequence
	RPB1	N6	NLink : Link to Sequence
	RPB2	N7	NLink : Link to Sequence
	Elongation Factor 1	N8	NLink : Link to Sequence
	Beta tubuline	N9	NLink : Link to Sequence
Electrophoresis
	GACA electrophoresis gels	G1	GLink : Link to Gel
	FITR	G2	GLink : Link to Gel
Pictures
	Pictures_Link	P1_Link	FLink : Link to File

Examples of hyperlinks for Table Yeasts species in Database CBS Database

Example 1: Record #1 [Aciculoconidium aculeatum], Display all Fields

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Yeasts species&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Aciculoconidium aculeatum' , Display all Fields, Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Yeasts species&Name=Aciculoconidium aculeatum&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Aciculoconidium' , Display all Fields, Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Yeasts species&Name=Aciculoconidium&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Arxula' , Display Field 'E1' (Remarks), Non Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Yeasts species&Name=Arxula&Fields=E1&ExactMatch=F

Example 5: Record Name is 'Arxula adeninivorans' , Display Field 'E1' (Remarks) and 'P1_Link' (Pictures_Link) , Exact Match Searching

http://www.cbs.knaw.nl/Collections/BioloMICS.aspx?Table=Yeasts species&Name=Arxula adeninivorans&Fields=E1&Fields=P1_Link&ExactMatch=T

Contact(s) for Database : CBS Database

The following link : BioloMICS Contact information will redirect you to the BioloMICS Contact information page

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Click here for full description.

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