CBS Database

Pairwise sequence alignment

I have read the disclaimer and I agree with the conditions and limitations associated with the usage of the software

Minimum similarity to keep results (0-100%):

Gap creation penalty (1-100):

Minimum overlap to keep results (0-100%):

Gap extension penalty (1-10):

Minimum overlap for rating reward (0-100%):

Word size (1-256):

Maximum alignments to display (1-1000):

Penalty for a nucleotide mismatch:

Select sorting mode:

Reward for a nucleotide match:

Select the reference(s) file(s) to be used for the alignment:

Name	Location	Status
FUNCBS	Local	Reachable	200614.746	0	0
YEASTS	Local	Reachable	5762.946	0	0
FUNSPECI	http://www.q-bank.eu/Fungi/	Reachable	7589.739	3	0
FUNSTRAI	http://www.q-bank.eu/Fungi/	Reachable	7500.889	3	0
FUSARIUM	http://www.cbs.knaw.nl/Fusarium/	Reachable	3250.631	3	0
CALONEC	http://www.cbs.knaw.nl/Calonectria/	Reachable	651.21	3	0
DERMATO	http://www.cbs.knaw.nl/Dermatophytes/	Reachable	307.658	3	0
INDOOR	http://www.cbs.knaw.nl/Indoor/	Reachable	2785.287	3	0
ITSSEQ	http://www.mycologylab.org/	Reachable	1563.015	3	0
FUNBOLD	http://www.fungalbarcoding.org/	Reachable	10476.969	3	0
PYCC	http://pycc.bio-aware.com/	Reachable	1541.362	3	0
Non-redundant GenBank	http://blast.ncbi.nlm.nih.gov/Blast.cgi	Reachable	0	0	19

Paste sequence to align:

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No records to display.